Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQLSDINQMNMTTANTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQGGRYFMRVEFELDHLQSRKDALIQTFAANVAERYGMQWRLAFVNDIKKVGILVSKVDHALLELLWRHARGSLPCEITHVISNHEDL-REAVENFGILFTVIKVTKDNKAEAYAQIHEMMQ--GNDLLVLARYMQILSEDFVSKWEMKIINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVSHDYNVEQLRELGEDVERNVLARAVKWHLEDRIIVDGNKTVVF
3NRB Chain:D ((5-285))--------------NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDED-SSKFFMRVSVEIPV-A-GVNDFNSAFG-KVVEKYNAEWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRLIVNGERTVVF


General information:
TITO was launched using:
RESULT:

Template: 3NRB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1396 -103610 -74.22 -372.70
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain D : 0.80

3D Compatibility (PKB) : -74.22
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_3NRB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NRB-query.scw
PDB file : Tito_Scwrl_3NRB.pdb: