Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKNKVILSISLAAALLFAAGCSANNTTSSSSSTESSKSTSTAESTTASSVDLNALELPQLTKDVAENEDLVEMVTNKGTIKIKLFPEYAPKAVENF--MTHAKDGY-YNGLTFHRVIKDFMIQGGD-PKGDGTGGESIWGEGFETEINNHLYNI-RGALSMARSQDPNSNGSQFFIVQNTDDMHDGLLKDDYPQAIIDAYKNGGYPSLDGHYTVFGQVIEGMDVVDAIANIETDSSDKPKEEVKIDKINILQEAKQK
4J5A Chain:X ((17-159))------------------------------------------------------------------------------GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANA-GPNTNGSQFFICT---------IKTDW---------------LDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD-----------


General information:
TITO was launched using:
RESULT:

Template: 4J5A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain X - contact count / total energy / energy per contact / energy per residue : 679 28414 41.85 205.90
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain X : 0.71

3D Compatibility (PKB) : 41.85
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.528

(partial model without unconserved sides chains):
PDB file : Tito_4J5A.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J5A-query.scw
PDB file : Tito_Scwrl_4J5A.pdb: