Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSEEVGIILREAVPGDAKDILLMMGQVNKETEFLVLDEAELLLPPETLEEELDYIYESNNNLLLLAIY-EGTIIGTASVKADSQFRLSHVGEV-GISILQEYWGMGLGTLMLEEIISWAKEMGVLFRLELDVQVRNERAVHLYRKMGFQIEAVMPRGARTDLGEFLDVYKMSYLIE
2J8M Chain:B ((3-165))------ASIRDAGVADLPGILAIYNDAVGNTTA-IWNET--PVDLANRQAWFDARAR-QGYPILVASDAAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQ-GLHVMVAAIESGNAASIGLHRRLGFEISGQMPQVGQK-FGRWLDLTFMQLNL-


General information:
TITO was launched using:
RESULT:

Template: 2J8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 723 -42545 -58.84 -264.25
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain B : 0.68

3D Compatibility (PKB) : -58.84
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.434

(partial model without unconserved sides chains):
PDB file : Tito_2J8M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2J8M-query.scw
PDB file : Tito_Scwrl_2J8M.pdb: