Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQ-MVYKHAISTVVPARNPRPAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFGGHQGGFDNDSKFEDGQDDENNR
5SZD Chain:K ((8-72))------LQESFLNTARKKRVKVSVYLVNGVRLQGRIRSFDLFTILLEDGKQQTLVYKHAITTIVPHERLE-I--------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5SZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain K - contact count / total energy / energy per contact / energy per residue : 232 -38318 -165.16 -598.71
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain K : 0.70

3D Compatibility (PKB) : -165.16
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.479

(partial model without unconserved sides chains):
PDB file : Tito_5SZD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5SZD-query.scw
PDB file : Tito_Scwrl_5SZD.pdb: