Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKFKKMLTLAAIGLSGFGLVACGNQSAASKQSASGTIEVISRENGSGTRGAFTEITGILKKDGDKKIDNTAKTAVIQNSTEGVLSAVQGNANAIGYISLGSLTKSVKALEIDGVKASRDTVLDGEYPLQRPFNIVWSSNLSKLGQDFISFIHSKQGQQVVTDNKFIEAKTETTEYTSQHLSGKLSVVGSTSVSSLMEKLAEAYKKENPEVTIDITSNGSSAGITAVKEKTADIGMVSRELTPEE--------GKSLTHDAIALDGIAVVVNNDNKAS-QVSMAELADVFSGKLTTWDKIK
4LVQ Chain:A ((51-165))---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKASGSTAQANAMTRFVNVFEQACPGQTLNYTANGSGAGISEFNGNQTDFGGSDVPLSKDEAAAAQRRCGSPAWNLPVVFGPIAVTYNLNSVSSLNLDGPTLAKIFNGSITQWNN--


General information:
TITO was launched using:
RESULT:

Template: 4LVQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 322 -10504 -32.62 -99.09
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -32.62
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.488

(partial model without unconserved sides chains):
PDB file : Tito_4LVQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LVQ-query.scw
PDB file : Tito_Scwrl_4LVQ.pdb: