Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITK-GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVE--AVDTIVE-STNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEKD
4YS8 Chain:A ((10-234))-LFALIPCAG-----G-SALPKQYRTLAGRALLHYTLAAFDACSEFAQTLVVISPD---DAHFDARRFAGL---RFAVRRCGGASRQASVMNGLIQLAEF-GATDADWVLVHDAARPGITPALIRTLIG-ALKDDPVGGIVALPVADTLKRVPAGGDAIERTESRNGLWQAQTPQMFRIGMLRDAIQRAQLEGRD-LTDEASAIEWAGHTPRVVQGSLRNFKVTYPEDFDLAEAIL---


General information:
TITO was launched using:
RESULT:

Template: 4YS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1089 -77091 -70.79 -356.90
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -70.79
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.367

(partial model without unconserved sides chains):
PDB file : Tito_4YS8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YS8-query.scw
PDB file : Tito_Scwrl_4YS8.pdb: