Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------MRLMINKSMKNIYIMGLLLACSG-FAMAETVTQQPTGQPVRTASNPNAIRIVTR---------PEIMGLWGMEIPNN--------KKCVEYYNFRSSNDVVIKSGEEWS---YGIY-------EY--QPSDDPKEQLSALVMQIKFDNNKVDCSGQKQDQTGDISQYFVQWKNDHTINFCSTAKGEQCFATLRRMLP
5L2D Chain:A ((19-252))PMWVDFSDTASMKNLDPQGGFKVGTVFKKEISPGYVVTLTVTELKPFNSTEIYKKRVEGTPTANTYDPNAINSYLKGYKDYGKTPPSVTGRTQIILPDDAVNWGIKFKVEATYRGNPVKPSVVMADGEDANPAEYGIFTTNGEGWEYVGEWMKGPYTVMT-EDMVKAFDKTRKDGLLILKDKSVDWSKYL-------SPDTVTGGLGSQVFGPIISAS-


General information:
TITO was launched using:
RESULT:

Template: 5L2D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 547 32581 59.56 206.21
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 59.56
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.151

(partial model without unconserved sides chains):
PDB file : Tito_5L2D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5L2D-query.scw
PDB file : Tito_Scwrl_5L2D.pdb: