Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLTIRDIAEMAGVSVTTVSQILNNKGSRF-SDKTRKKVLSIVNEHHYKPDYFASNVINRHSKTIGMIVPDVTDFFFSKLIEGVESYLNPLGYVIMLCNSRHSQENEIKYLQELSHRSVDGILLATPNILPEKYALDSGFYQKMPIILIDRGLNRRD-NGRLIVKEYEGAYQAVSLFIENGHTKIGM----LKETTGYYQLEERFNGYRHALKDHGLPFNGKFVEHGELTVQGGYTASKKLLK--HKDITAIFCGNDAMAIGCYQAIDELGKKIPEDISVIGFDGLKLSEYMIPQLTTVQQPSFDIGFYAARFLIDTIEFPQRKVPNKV-FETKLIIRESVKVLTKG
1VPW Chain:A ((2-330))---TIKDVAKRANVSTTTVSHVINK--TRFVAEETRNAVWAAIKELHYSPSAVARSMKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE-YPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG----AGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP-TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRI-VNKREEPQSIEVHPRLIERRSV------


General information:
TITO was launched using:
RESULT:

Template: 1VPW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1669 -24485 -14.67 -76.52
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -14.67
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.518

(partial model without unconserved sides chains):
PDB file : Tito_1VPW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VPW-query.scw
PDB file : Tito_Scwrl_1VPW.pdb: