Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGMAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGTKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAEQAKAYGLIDEVMENSSSLN
4EMP Chain:V ((4-190))---IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIAIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM-------


General information:
TITO was launched using:
RESULT:

Template: 4EMP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain V - contact count / total energy / energy per contact / energy per residue : 851 -116768 -137.21 -624.43
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain V : 0.95

3D Compatibility (PKB) : -137.21
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.95
QMean score : 0.556

(partial model without unconserved sides chains):
PDB file : Tito_4EMP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4EMP-query.scw
PDB file : Tito_Scwrl_4EMP.pdb: