Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------MFKDLYLFMKDIYQNRKLLLQFSINDFKSRYAGSFLGILWAFINPL-FTVLIYWLVFGVGLKAQMIDAKYPFIVYLVTGMIPWFFFSDA---FASTTVVFREYTYLVKKVV-------FNIRILPTTKILSNLYTHLFFILIG--------IAVALINGIYPSAMSLQL---IYYLFCMCAFLTGL-TWLTASIQPFLPDIMQLITIVLQLIMWTLPILWSPNQFDSGLVSILKLN----PLYYVVQGYRESFLSEAWFWEHGTYTLYFWVFTLVMFVIGSAV----FRRLKPHFSDVL---
2QTH Chain:A ((1-355))MKTAALFVSKEFEEEAIALVEGA--NYKVTSIYKLPKSPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETSTIKFYKRRINKLMKELESIKIIPSIGIVGYTNSGKTSLFNSLTGLMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY-SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL


General information:
TITO was launched using:
RESULT:

Template: 2QTH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1215 -131176 -107.96 -495.00
target 2D structure prediction score : 0.36
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -107.96
2D Compatibility (Sec. Struct. Predict.) : 0.36
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.247

(partial model without unconserved sides chains):
PDB file : Tito_2QTH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2QTH-query.scw
PDB file : Tito_Scwrl_2QTH.pdb: