Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAAKKVNRKRRVKKNIEAGIAHIHSTFNNTIIMITDTHGNALAWSSAGSLGFKGSKKSTPFAAQMAAETATKAAMEHGLKTVEVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNGARPPKRRRV
5NO4 Chain:K ((1-117))------------RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV


General information:
TITO was launched using:
RESULT:

Template: 5NO4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain K - contact count / total energy / energy per contact / energy per residue : 510 -37053 -72.65 -316.69
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain K : 0.91

3D Compatibility (PKB) : -72.65
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.91
QMean score : 0.769

(partial model without unconserved sides chains):
PDB file : Tito_5NO4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5NO4-query.scw
PDB file : Tito_Scwrl_5NO4.pdb: