Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNTKTERLVSEIEDFEYIVTESNIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITNEKYPRLVITRKVLKDKALYFGPYPDVGAANETKKILDRLFPLRKCKPSQTKEPCLYYHLGQCLCPYYFDVDPKVYTKIVDEVKKFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDRDVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKEVLIPDTIDKPSVEALLATKVLQPKRGEKKKLVELANKNASVALNERFDLIARKQERTIGAVERLGNAMNIPTPIRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIKTVNGPDDYASMREVIYRRYSRVIREGLPLPDLILIDGGKGQVDVAKDVLENQLGIDIPIAGMAKNDKHKTNELLFGIDLAVVPLERNSPEFFLLQRIQDEVHRFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEIGLPKNVAQNVFDKLHQE
1YD4 Chain:A ((1-89))MKEKIRKKILLAPEEPGVYIFKNK-GVPIFIGKAKRLSNRLRSYLN-PQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1YD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 374 -36084 -96.48 -405.43
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -96.48
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.619

(partial model without unconserved sides chains):
PDB file : Tito_1YD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YD4-query.scw
PDB file : Tito_Scwrl_1YD4.pdb: