Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MTFLDLFAGIGGFCLGMEQAGHQCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSVSDEFIQSLGPVDILCGGFPCQAFSIAGKRQGFSDTRGTLFFEIARFAAILQPKFLFLENVRGLLNHEGGATFETILRTLDGLGYDVEWQVLNSKAY-VPQNRERIFLIGHSRDACTEQV-FPIIGSSPTS-DQNIRNLLNINPSNRGMGGQVYGSDDVAPTLTGDEGIKIALPVDDGISVAGMLLGNFEQGNRVYEITGTAPTLSTKQGGTKIMLRKNETEYQEVKPGNSVNLAFPNSTSRRGRLGKQSVHTLLTGDQQAVVTDQYQIRKLTPRECWRLQGFPDWAFDRASQVN-SDSQLYKQAGNSVTVPVIFDIARRLKEVKTDDL 1SKM Chain:A ((12-318)) LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPE---GDITQVNEKTIPDH---DILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFP----KPFELNTFVKDLLLPDSEVEHL---VIDRKDLVMT---NQEIEQTTPK----TVRLGIVGKGGQGERIYSTRGIAITLSAYGGG----------------------------------IFAKTGGYLVNG----------KTRKLHPRECARVMGYPD-----SYKVHPSTSQAYKQFGNSVVINVLQYIAYNI--------

General information: TITO was launched using: RESULT: Template: 1SKM.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1706 -100257 -58.77 -330.88 target 2D structure prediction score : 0.60 Monomeric hydrophicity matching model chain A : 0.76 3D Compatibility (PKB) : -58.77 2D Compatibility (Sec. Struct. Predict.) : 0.60 1D Compatibility (Hydrophobicity) : 0.76 QMean score : 0.442

(partial model without unconserved sides chains): PDB file : Tito_1SKM.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1SKM-query.scw PDB file : Tito_Scwrl_1SKM.pdb: