Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQHLSLPKDKIRFLLLEGVHQNAVDTLNAAGYTNIDYRK-TALEGEALKEAIKDAHFIGIRSRTQLTEEVFEAANKLIAVGCFCIGTNQVDLKAAMARGIPVFNAPYSNTRSVAELVLAETILLLRRVPEKSAACHRGGWDKSAVGSFETRGKTLGIVGYGSIGSQLSVLAESMGMNVIYYDAVTKLPMGNARQVGSLDELLATADVVTLHIPDVPSTRNFFTKEQFAKMKEGAIFLNAARGTCVVIEDLADAIKSGHLAGAAVDVFPKEPKANGEEFQSPLRGLDNVILTPHVGGSTMEAQANIGLEVAEKFVAYSDKGMTLSAVNFPEIALPLTAGQHRLLHIHKNVPGVLSKINNLFAEQGINISGQSLMTKGDIGYLVMDVDAS--ASQEALDMLHEVEGTIRVRVLF
1SC6 Chain:D ((2-404))--------KDKIKFLLVEGVHQKALESLRAAGYT-NIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVG------SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV----------PFTSPLAEFDNVLLTP----STQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL-HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY


General information:
TITO was launched using:
RESULT:

Template: 1SC6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 2044 -91634 -44.83 -241.14
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain D : 0.88

3D Compatibility (PKB) : -44.83
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.648

(partial model without unconserved sides chains):
PDB file : Tito_1SC6.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1SC6-query.scw
PDB file : Tito_Scwrl_1SC6.pdb: