Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLTKTVKSFGLAMGLLACSLPLYAKNNVVVVATGGTIAGAGASSANSATYTAAKVPVDALINAVPQIQDLANVSGIQALQVASESITDKELLQIARQVNELVKKPTVNGVVITHGTDTLEETAFFLNLVVHTDKPIVLVGSMRPSTALSADGPLNLYSAVALAASDDAKNKGVMVLMNDSIFAARDVTKGINIHTNAFVSQ-WGALGTLVEGKPYWFRQSVKRHTNASEFNIENIKGDALPTVQIVYGSDSMLPDAYEAYAKAGAKAIIHAGTGNGSVAKYIVPTLQNLHDQNGIQIIRSSRVPQGFVLRDAEQ-PDSKYGWVAAHDLNPQKARLLAALALTKTNDAKEIQRMFWQY
1HO3 Chain:B ((1-325))------------------------LPNITILATGGTIAGGGDSATK-SNFTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDC--DKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVS--KLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAA-KTGTAVVRSSRVPTGATTQD-AEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQ-


General information:
TITO was launched using:
RESULT:

Template: 1HO3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1959 -93374 -47.66 -289.08
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -47.66
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.530

(partial model without unconserved sides chains):
PDB file : Tito_1HO3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1HO3-query.scw
PDB file : Tito_Scwrl_1HO3.pdb: