Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKTSVIYPGTFDPITNGHVDLVTRASRMFDEVVVAIAIGHHKNPLFSLEERVALAQSSLGHLSNVEFVGFDGLLVNFFKEQKATAVLRGLRAVSDFEYEFQLANMNRQLDPHFEAVFLTPSEQYSFISSTLIREIARLKGDVTKFVPQAVVEAFERKHQQGW
5JBN Chain:A ((5-164))--QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLAVD-


General information:
TITO was launched using:
RESULT:

Template: 5JBN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 755 -108337 -143.49 -677.10
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.89

3D Compatibility (PKB) : -143.49
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.89
QMean score : 0.640

(partial model without unconserved sides chains):
PDB file : Tito_5JBN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JBN-query.scw
PDB file : Tito_Scwrl_5JBN.pdb: