Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQQQVIIVGGGMVGLSLSLMLAKANIAVKLLEAVKYPNYDDQNVAPYHSSFDARN--TALSRRSVQIYQKLGLWDALQQHATPILQVHITEQGSFG-KARLIAEQEKVESFGQVIENAWLGRVLLTQVRQQPLIELIDGVQVTALTQDAEQVHIEAQRGDEVLKLESKLLIAADGRDSFCRQAIGVGVD----VHDYDQVAIVTTVQTSKP---H-EHVGFERFSA-LGPLALLPLPGEYRRSVVWPVKKGTE-----GEWLGE-ENDQHFLDALQKTYGDRAGK---FE-KTGKRFSYPLSQVLAHKQA-VGRIILMGNAAHTIHPVAGQGFNLCLRDADVLLRYLVNQLSASDDIGNPDNLLAYEEARLSDQQRVIKFCDTVVRGFSNQNPLLKLIRNTGLIAFDVIPGVKPLVANYAMGLKA
5NAK Chain:B ((7-375))-ARQVTIIGAGLAGTLVARLLARNGWQVNLFERRPDPRI--------ETGARGRSINLALAERGAHALRLAGLEREVLAEAVMMRGRMVHVPGTPPNLQPYG---RDDSEVIWSINRDRLNRILLDGAEAA-GASIHFNLGLDSVDFARQRLTLSNVSG-ERLEKRFHLLIGADGCNSAVRQAMASVVDLGEHLETQPHGYKELQITPEASAQFNLEPNALHIWPHGDYMCIALPNLD-RSFTVTLFLHHQSPAAQPASPSFAQLVDGHAARRFFQRQFPDLSPMLDSLEQDFEHHPTGKLATLRLTTWHVGGQAVLLGDAAHPMVPFHGQGMNCALEDAVALAEHLQSAAD------NASALAAFTAQRQPDALAIQAMALENYV---------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5NAK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1833 -9088 -4.96 -26.57
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.66

3D Compatibility (PKB) : -4.96
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.484

(partial model without unconserved sides chains):
PDB file : Tito_5NAK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5NAK-query.scw
PDB file : Tito_Scwrl_5NAK.pdb: