Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MQQQVIIVGGGMVGLSLSLMLAKANIAVKLLEAVKYPNYDDQNVAPYHSSFDARN--TALSRRSVQIYQKLGLWDALQQHATPILQVHITEQGSFG-KARLIAEQEKVESFGQVIENAWLGRVLLTQVRQQPLIELIDGVQVTALTQDAEQVHIEAQRGDEVLKLESKLLIAADGRDSFCRQAIGVGVD----VHDYDQVAIVTTVQTSKP---H-EHVGFERFSA-LGPLALLPLPGEYRRSVVWPVKKGTE-----GEWLGE-ENDQHFLDALQKTYGDRAGK---FE-KTGKRFSYPLSQVLAHKQA-VGRIILMGNAAHTIHPVAGQGFNLCLRDADVLLRYLVNQLSASDDIGNPDNLLAYEEARLSDQQRVIKFCDTVVRGFSNQNPLLKLIRNTGLIAFDVIPGVKPLVANYAMGLKA 5NAK Chain:B ((7-375)) -ARQVTIIGAGLAGTLVARLLARNGWQVNLFERRPDPRI--------ETGARGRSINLALAERGAHALRLAGLEREVLAEAVMMRGRMVHVPGTPPNLQPYG---RDDSEVIWSINRDRLNRILLDGAEAA-GASIHFNLGLDSVDFARQRLTLSNVSG-ERLEKRFHLLIGADGCNSAVRQAMASVVDLGEHLETQPHGYKELQITPEASAQFNLEPNALHIWPHGDYMCIALPNLD-RSFTVTLFLHHQSPAAQPASPSFAQLVDGHAARRFFQRQFPDLSPMLDSLEQDFEHHPTGKLATLRLTTWHVGGQAVLLGDAAHPMVPFHGQGMNCALEDAVALAEHLQSAAD------NASALAAFTAQRQPDALAIQAMALENYV---------------------------------------

General information: TITO was launched using: RESULT: Template: 5NAK.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1833 -9088 -4.96 -26.57 target 2D structure prediction score : 0.65 Monomeric hydrophicity matching model chain B : 0.66 3D Compatibility (PKB) : -4.96 2D Compatibility (Sec. Struct. Predict.) : 0.65 1D Compatibility (Hydrophobicity) : 0.66 QMean score : 0.484

(partial model without unconserved sides chains): PDB file : Tito_5NAK.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5NAK-query.scw PDB file : Tito_Scwrl_5NAK.pdb: