Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAELLTLARPYAKAAFAYASEQGATDNWSNALQVLSAAVQDEAFSAYLNRPEHTPAEQVKLFAKVLGEDQSQAVSNFLTLLADNDRLVLLPEIAAEYEQLKSQNNNNVDVVIESAFPLTAEQEQLLKSALEKRFNSTVTVSVEVKPELIAGVVIRAGDQVIDDSALNKLEKMRTRLLA
3PVK Chain:A ((154-253))------------------------------------------AYSLYLNSPDAATGQII--FGGV---DNAKYSGSLIALPVTSDRELRISLGSVEVSG-KTINTDNVDVLLDSGTTITYLQQDLADQII-KAFNGKLT---------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3PVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 211 -13487 -63.92 -149.85
target 2D structure prediction score : 0.36
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -63.92
2D Compatibility (Sec. Struct. Predict.) : 0.36
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.167

(partial model without unconserved sides chains):
PDB file : Tito_3PVK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3PVK-query.scw
PDB file : Tito_Scwrl_3PVK.pdb: