Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLIIPAIDLKDGKCVRLKQGRMEDDTVFSDDLVATAQHWVNEGARRLHLVDLNGAFAGTPIHKPVVEAIAKAQPELPIQIGGGIRSLETIEHYLEAGVTFVIIGTKAVQEPEFVEEACKSFAGH-IIVGIDAM-----NGMVATDGWANVTDVKATDLAKRFADAGVSSIVYTDIARDGMMQGVNVEQTVNL-AQYSGLPVIASGGVTNLDDVRNLKGQLGILGAITGRAIYEGTLNLREAQLLLDENRL
5A5W Chain:A ((1-238))-MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLV-AGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGT-GVRGVIVGRALLEGKFTVKEA---------


General information:
TITO was launched using:
RESULT:

Template: 5A5W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1299 -75759 -58.32 -327.96
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -58.32
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.604

(partial model without unconserved sides chains):
PDB file : Tito_5A5W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5A5W-query.scw
PDB file : Tito_Scwrl_5A5W.pdb: