Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MQEFLISTSIVALAEMGDKTQLLALLLSACFRKPIPILIAILLATLINHGISAVLGQWITTVLSPAILVWVLAVGFIGMAFWMLIPDELDDETASINKWQKFGVFGATFILFFLAEIGDKTQIATVALAARYDSIFWVMLGTTLGM---MIANAPAVFIGNKLAERLSIALIHKIGAAIFFIVGVSTLVQHYFF------
3BM1 Chain:B ((1-183))MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAP-------------DHK-----------SMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVG--FLYLGTPQLKVPDPTPFVTYF


General information:
TITO was launched using:
RESULT:

Template: 3BM1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 798 -54843 -68.72 -332.38
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain B : 0.60

3D Compatibility (PKB) : -68.72
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.209

(partial model without unconserved sides chains):
PDB file : Tito_3BM1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3BM1-query.scw
PDB file : Tito_Scwrl_3BM1.pdb: