Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGITPMYVCLC------RGITDQDIKDAIENGAESYREIRDLLDLGT--CCGR-CAPEARAIISEELAEIAARISVAA
2GAG Chain:A ((475-538))----DAVNYKFHFVDLQRDQTVADVLRATGAGMKSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLG----------


General information:
TITO was launched using:
RESULT:

Template: 2GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 202 6533 32.34 118.78
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 32.34
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.613

(partial model without unconserved sides chains):
PDB file : Tito_2GAG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GAG-query.scw
PDB file : Tito_Scwrl_2GAG.pdb: