Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQEMETRYTHSPEDIRHYSTEQLRKEFLVEKVFEPGKISLTYTHNDRMIFGGVTPTEKELEITLDKELGVDYFLERRELGVINIGGPGFIEIDGQKEEMKKQDGYYIGKETRHVVFSSQDAENPAKFYISSVPAHH----KYPNVKI-SIDQVKPMETGEGLTLNERKI-YQYIHPNVCESCQLQMGYTILEPGSAWNTMPC-HTHERRMEAYVYFDYANEDTRVFHMMGKPDETKHLVVDNEQAIISPSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVQMDQLK
1SQ4 Chain:A ((89-254))--------------------------------------------------------------------------NAEA-VLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKV-RNTT-GQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPL-VMP--DTEGRWSTTRFVDMS-DMRHDMHVNIVNFEPGG---VIPFAETHV-MEHGLYVLE----GKAVYRL-N--QDW--VEVEAGDFMWLRAFCPQACYSGG---------------------------


General information:
TITO was launched using:
RESULT:

Template: 1SQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 663 -11120 -16.77 -69.93
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -16.77
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.379

(partial model without unconserved sides chains):
PDB file : Tito_1SQ4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1SQ4-query.scw
PDB file : Tito_Scwrl_1SQ4.pdb: