Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGSTITPWVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQAFAQSK
4Y96 Chain:B ((6-254))----TRKKFVAGNWKMNTTLAEAKALGAAVAKGV-----TDDRVTVAVFPPYPWLTAVGEVLK--GSPVALGAQDVS-SEKKGAFTGEVSPAMLLETGCKYALIGHSERRHIIGESETFINHKVHTALEEGLSVVLCMGETLAERERGLQERVFQRQVYAACAGLTDEQFG-RIVIAYEPVWAIGTGKVATPEQAQEAHAFVRSKLRLLYGDKIADSTPIVYGGSVTPDNTVGLMSQPDVDGALVGGASLKADSFLAIVKAA----


General information:
TITO was launched using:
RESULT:

Template: 4Y96.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1387 -123818 -89.27 -501.29
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain B : 0.83

3D Compatibility (PKB) : -89.27
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_4Y96.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Y96-query.scw
PDB file : Tito_Scwrl_4Y96.pdb: