Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVAQIRIGQGMDVHAFEEGKFVTLAGVQIPHTHGLKAHSDGDVVLHALCDALLGALALGDIGQHFPDTDPEFKGADSRVLLKHVYQLILDRGYHLNNADITVACERPKLAKYNLEMRQSIADVLNVDLNQISIKATTTEKLGFTGRQEGILATATVLISH
2PMP Chain:A ((2-159))--LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMK


General information:
TITO was launched using:
RESULT:

Template: 2PMP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 848 -125982 -148.56 -797.35
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.83

3D Compatibility (PKB) : -148.56
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.589

(partial model without unconserved sides chains):
PDB file : Tito_2PMP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PMP-query.scw
PDB file : Tito_Scwrl_2PMP.pdb: