Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIAVDAMGGDYAPQAIVEGVNQALSDFSDIEVQLYGDEAKIKQYLTATERVSIIHTDEKIDSDDEPTRAIRNKKNASMVLAAKAVKDGEADAVLSAGNTGALLAAGFFIVGRIKNIDR---PGLMSTL--PTVDGKGFDMLDLGANAENTAQHLHQYAVLGSFYAKNVRGIAQPRVGLLNNGTESSKGDPLRKETYELLAADESL-NFIGNVEAR--------------DLMNGVADVVVA-DGFTGNAVLKSIEGTAMGIMGLLKTAITGGGLRAKLGALLLKDSLRGLKKQLNYSDVGGAVLFGVKAPVVKTHGSSDAKAVYSTIRQIRTMLETDVVAQTAREFSGE
3U9E Chain:B ((28-290))--------------DEVVLETIRLALKQK-LGKFLLFGKKEDKTLTA--NESVTWIQTDT-------AEAA--------AQGAILAVKNKEADILVKGFIPTAT--LMHHVLKKENGLRTDQLLSQIAIFDIPTY-HKPLLITDCAMNVAPKTKEKIAITENALAVAHQ-IGITNPKIALLSAVEEVTAKMPSTLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLV------------YFA-------------------------GAK-VGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVE--------------


General information:
TITO was launched using:
RESULT:

Template: 3U9E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1189 -35794 -30.10 -147.91
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.65

3D Compatibility (PKB) : -30.10
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.423

(partial model without unconserved sides chains):
PDB file : Tito_3U9E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3U9E-query.scw
PDB file : Tito_Scwrl_3U9E.pdb: