Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAIETGTSLAGQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELSLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGT---LLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE
5NIK Chain:G ((47-302))-------------------------------------------QQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA----------------------------------------------------------------ELKLARVTYSRQQRLAQTQAVSQ------------------------QDLDNAATEMAVKQ---------------------------------------AQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQIT-TLQGQTVIAAQQAPNILTLADM----SAMLVKAQVSEADVIHLKPGQKAWFTVLGDQL--TRYEGQIKDVLPTPEKVNDAIFYYARFEVPNP---NGLLRLDMTAQVHIQLTD---------------


General information:
TITO was launched using:
RESULT:

Template: 5NIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain G - contact count / total energy / energy per contact / energy per residue : 922 11977 12.99 47.34
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain G : 0.62

3D Compatibility (PKB) : 12.99
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.425

(partial model without unconserved sides chains):
PDB file : Tito_5NIK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5NIK-query.scw
PDB file : Tito_Scwrl_5NIK.pdb: