Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKFKIFLFIEACLLTGALILMVSEHFSRFLLILFLFLLLIRYYTGKEGNNLLLVAATILFFFIVMLNPFVILAIFVAVIYSLFLLYPMMNQEKEQTNLVFEEVVTVKKEK-NRWFGNLHHFSSYQTCQFDDINLFRFMGKDTIHLERVILTNHDNVIILRKIVGTTKIIVPVDVEVSLSVNCLYGDLTFFNQPKRALRNEHYHQETKDYLKSNKSVKIFLTTMIGDVEVVRG
2NC8 Chain:A ((12-182))---------------------------GRENLYFQGHMLRVRASITISPDDLVSG----------------------EIIAAAKPKNSKDTGPALDGDVPFSQKVAVSNYDSDGYVGSQAVFSDLT---FAELPQLANMNSDAAGVNLSLRRNGNIVILEGRADLTSVSDPDADVELTVA----------FPAAVTSTNGDRIEPEVVQWKLKPGVVSTMSAQARYTDPNTRS


General information:
TITO was launched using:
RESULT:

Template: 2NC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 884 -10531 -11.91 -61.95
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain A : 0.54

3D Compatibility (PKB) : -11.91
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.238

(partial model without unconserved sides chains):
PDB file : Tito_2NC8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2NC8-query.scw
PDB file : Tito_Scwrl_2NC8.pdb: