Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKGGQMKKVMFAGLSLLSLVVLMACGEEETKKTQAAQQPKQQTTVQQISVGKDVPDFTLQSMDGKEVKLSDFKGKKVYLKFWASWCGPCKKSMPELMELAAKP-DRDFEILTVIAPGIQGEKTVEQFPQWFQEQGYKDIPVLYDTKATTFQAYQIRSIPTEYLIDSQGKIGKIQFGAISNADAEAAFKEMN
4NMU Chain:C ((7-145))----------------------------------------------EKMQIGKEAPNFVVTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDA--D---ETDIAVKNFVNQYGL-KFPVAIDKGQKIIGTYGVGPLPTSFLIDKDGKVVEQIIGEQTKEQLEGYLKKI-


General information:
TITO was launched using:
RESULT:

Template: 4NMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 657 -35766 -54.44 -259.17
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain C : 0.75

3D Compatibility (PKB) : -54.44
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.617

(partial model without unconserved sides chains):
PDB file : Tito_4NMU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NMU-query.scw
PDB file : Tito_Scwrl_4NMU.pdb: