Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSFEQKPKVTVILANLGTPDEATVPAVRRFLKQFLSDPRVIEIPKFIWWIILNLFVLPFRPKRAAHAYASVWSTDSPMREIVFEQTQRVQAYLERENKQFDLTVLPAMTYGNLGIDAVLEKLSAHPQEHVILLPLFPQYSATSTAPLYDAFAKWIPTQRNLPGL--TIIKDYYQHPMFIQALAESVLAYQEQHGKPEK-----LLMSFHGIPQPYADKGDPYADRCRITAKLVAEALHLKDDEWAISFQSRFGKQEWVKPYTDQLLQDWAKQGVKSVQVLSPAFSADCLETLEELAIQNAE-LFQQAGGGSYAYIPALNSDQAHIDLLAGLVQANLDALTHTLAHR
4KMM Chain:A ((118-338))-------------------------------------------------------------------------------------------------------------------EEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILK-ELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNP-YRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS--------


General information:
TITO was launched using:
RESULT:

Template: 4KMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 955 -6278 -6.57 -29.47
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -6.57
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.578

(partial model without unconserved sides chains):
PDB file : Tito_4KMM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4KMM-query.scw
PDB file : Tito_Scwrl_4KMM.pdb: