Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGDVILIVDEGLRTLMDFRFNRHFKAQPGENGMSKGMHGRGSEDTYVKVPQGTTVRDAETGALLGDLIENGQTLVVAKGGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLL-----SVISSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFL----RHIERTRVILHVIDMSGMEGRDPYEDYLAINKELSTYNLRLLERPQIIVANKMDMPDAQENLVKFKEQLNKEKEDEFADDIPVFPISGVTRQGLDALLNATADLLEVTPE-FPLYEEELEERNCTLWIQSRRS
3R9X Chain:A ((12-190))------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG----TTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDAT--EGWRPRDE------EIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK-KHPELTE---IVPISALKGANLDELVKT---ILKYLPEGEPLFPEDM--------------


General information:
TITO was launched using:
RESULT:

Template: 3R9X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 817 45368 55.53 268.45
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 55.53
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.466

(partial model without unconserved sides chains):
PDB file : Tito_3R9X.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3R9X-query.scw
PDB file : Tito_Scwrl_3R9X.pdb: