Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEKKQSRLRRAKSTRLHIRALGVTRLCVNRTPRHIYAQVISADGGKVLAQASTLDASL--RSGTTGNIEAATKVGALIAERAKAAGVTKVAFDRSGFKYHGRIKALADAAREGGLEF
5GAG Chain:P ((18-117))------------------LQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF


General information:
TITO was launched using:
RESULT:

Template: 5GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain P - contact count / total energy / energy per contact / energy per residue : 447 -10907 -24.40 -111.29
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain P : 0.87

3D Compatibility (PKB) : -24.40
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.736

(partial model without unconserved sides chains):
PDB file : Tito_5GAG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GAG-query.scw
PDB file : Tito_Scwrl_5GAG.pdb: