Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MKNKNIG------CWLLLAGSSSVCAM-----------QPLDDQSLAAATGQNGL-TLGI-QADQVKFNQVALIDTNGIASTSYNSKAGLIIAGNSTNPVPGIEFIKAAVSTNPSFNIAIDT-DAGGGNPFLNLAVTMGSDVNGIRLLPFSVYLAPSTSLPSPS-DYALTSYAPKSIFSSGTTVNTGVKELIRS---TGNLDINFVQTNKPRLNIQLGH----AAQSVMVKFGGAIQSICSAA-SGCPITLVSDNTGATFGF-KFAGTNASTGFVLDGFYAGVDPTGLTIGNIGVSSKFDA-SLNNVTLGNLGTQSTTTFNNLPNGSMGSFGVTGASVTDFKMKVSGF----------------------------
1SQ9 Chain:A ((3-395))KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHNNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG


General information:
TITO was launched using:
RESULT:

Template: 1SQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1775 50165 28.26 158.75
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 28.26
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.136

(partial model without unconserved sides chains):
PDB file : Tito_1SQ9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1SQ9-query.scw
PDB file : Tito_Scwrl_1SQ9.pdb: