Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMWKMDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVN-EHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTT------HAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKKLAEQAAAENALAAL
1YYO Chain:A ((2-217))--KMLEQLEKKL----GYTFKDKSLLEKALTHVSYSKKEH-------YETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINE------TIIGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKK--DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRT-LGEGKSKKEAEQRAAEELIKLL


General information:
TITO was launched using:
RESULT:

Template: 1YYO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 816 4404 5.40 21.07
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : 5.40
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.460

(partial model without unconserved sides chains):
PDB file : Tito_1YYO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YYO-query.scw
PDB file : Tito_Scwrl_1YYO.pdb: