Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQILGGNNMAFPQLDLKSEKGPKAVIKTNRGDITVQLFPELAPKTVQNFIELS--KKGY-YDGVIFHRVIPDFMIQGGDPT-GTGMGGESIYGESFEDEFSRELFNLRGALSMANSGPNTNGSQFFIVNNTNVPANMLGQLEGAGFPSEIIEAYKGGGTPWLDFRHTVFGHVLEGMDTVDEIANVQRGPQDRPVHDVVIETIEISE
1YND Chain:A ((18-142))------------------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK---------------------------TEWLDGKHVVFGKVKEGMNIVEAM------------------------


General information:
TITO was launched using:
RESULT:

Template: 1YND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 565 13235 23.42 109.38
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : 23.42
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.511

(partial model without unconserved sides chains):
PDB file : Tito_1YND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YND-query.scw
PDB file : Tito_Scwrl_1YND.pdb: