Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDKYEILAQIGDGTFGSVAKAVSKKTGQLVAIKKMKQKFYTWEECV---KLPEVDVVRRIHGHPNVVKLREVIRENNELFFVFEYMDGDLLGVIKKAKQQGGPPASTPSAAPLIPYPLVKNYMRQMLQALVYIHKRGYFHRDMKPENLLIRKEASGDEVLKLADFGLVKEICARPPFTDYVSTRWYRAPELLLQDRFYGAAVDVWAAGCIMAELITMRPLFPGTNEVDQLFKIMSVLGSPTEEVWAGGLRLAKKIRYTFPKVAGSGLAQALPSHIPL--PALDLLRQMLVYDPKVRLTAEQCLQHPFFNVGIDECNAPSAAALDQLALMAKRMLPGSKTAPPALKSPTAGQVAALKAARASTDASLSDTSSRKFYLLGTLKDPAPSLPKLPVALSTSPPSLDAPPNASSPLRGRGALSPAGMPVLANGHQCPSLTTTVAKGKRRSQETADTSLAKKLAGLKNVPTGKGKLPVSYALPAASAVHSPRAAPNLKVSASVARPYPLAPTANNRDAVASPRHHNPYKEAETTSPTAASAAAKVEIDLDELMEEFASEMTAMGVLAQRHDSGASAESKSESYVSQPALPPDPVATLLNNSRYRRKSTTSADPLLKGNNSPRATHQLDTRKVDDVAAKSDLPRIDHSAPKGMSPSLKALLAKHKTSGLAFP
1JVP Chain:P ((1-287))MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR---------VPSTAIREISLLKELN-HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG------------IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGA----IKLADFGLARAF---------VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP-DYKPSFPKWARQDFSKVVP---PLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1JVP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain P - contact count / total energy / energy per contact / energy per residue : 1294 -48706 -37.64 -183.79
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain P : 0.67

3D Compatibility (PKB) : -37.64
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.599

(partial model without unconserved sides chains):
PDB file : Tito_1JVP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JVP-query.scw
PDB file : Tito_Scwrl_1JVP.pdb: