Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------------------------------------------------------------MQEDIDAGKVSGTKIITHTQIRQELQ--SKVDVAQARFDANPSKKNKDKLADAQKDLSHAIRDGEC--LIKGC--VPSEYLKK----------------------------------------------------------------------
5DA1 Chain:A ((2-223))SSSPLPKVAHNLGFYFSPDLTQFAKLPAELAPHWPVVTTQNNERWPDRLVASLRPIHKYSRACIGAGYMVGPSVFLGTPGVVSYYLTKFVRGEAQVLPETVFSTGRIEVDCREYLDDRERVVAESLPHAFIGDVKGTTVGGCHHVTSKYLPRFLPKESVAVVGVSSPGKAAKAVCTLTDVYLPDLEAYLHPETQSRCWKVMLDFKEVRLMVWKDKTAYFQLE


General information:
TITO was launched using:
RESULT:

Template: 5DA1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 294 22076 75.09 286.69
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.55

3D Compatibility (PKB) : 75.09
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.55
QMean score : 0.232

(partial model without unconserved sides chains):
PDB file : Tito_5DA1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5DA1-query.scw
PDB file : Tito_Scwrl_5DA1.pdb: