Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFITGLIMGDVTTGLLIGGNLQLFVLGVGTFGGASRIDATSGAVLATAFSVSQGIDAPLAITTIAVPVAALLTYFDVLGRMTTTFFAHRVDAAIERFDYKGIERNYLLGAIPWALSRALPVFFALAFGGAFVQSVVDFVEAYKWVADGLTLAGRMLPGLGF--AILLRYLPVKRNLHYLAMGFG---LTAMLTVLYSYVTGLGGAVAGIVGTLPAEVAQKIGFVNNFKGLSMIGISIVGIFLAVLHFKNSQKVAVAAPSTPSESGEIEDDEF
2B2J Chain:A ((8-74))---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WILASTALVMLMVPGVGFFYAGMVRR---KNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGL-----------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2B2J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 86 -21335 -248.08 -344.10
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.48

3D Compatibility (PKB) : -248.08
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.48
QMean score : 0.030

(partial model without unconserved sides chains):
PDB file : Tito_2B2J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2B2J-query.scw
PDB file : Tito_Scwrl_2B2J.pdb: