Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKLEVKDNKKLVLKSVICKKLHDTKVED-VDQEINRFHQHLQLLKAQIFGPLIVKSCGTTIH-DDGLITTDFEFYIQAHNAQQ---YSNIYDVQDSISVPYCLYVRFEDSPEYLQYAYSKLD-LYVYENDIQTDG-IVYTVYVNSS--PEKMVVDIFIPIVSL
1JYH Chain:A ((6-154))---------KQEEKRTVAGFHLV-GPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP--AEKLRCDTVVTVPGYFTLPENSEGVILTEITG-GQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP-


General information:
TITO was launched using:
RESULT:

Template: 1JYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 504 -16149 -32.04 -115.35
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -32.04
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.450

(partial model without unconserved sides chains):
PDB file : Tito_1JYH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JYH-query.scw
PDB file : Tito_Scwrl_1JYH.pdb: