Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKKSILTTLLFAVLYFLCMGIGVLLGNLFDQTGNMFYAPAFTALVGGSVYMILVAKVPRFGAITTIGLVIALFFLGTKHGAGSFLPGIICGLLADGVAHLGKYKDKTKNFLSFIIFAFSTTGPILLMWIAPKAYMATLLARGKSQEYIDRIMVAPNPGTVLLFIASIVIGALVGALIGQALSKKFAQKI 5LNK Chain:W ((5-143)) ------------------------GKRLFIIKPSGFYDKRFLKLLRFYILL------------TGIPVVIGITLINVFIGEAE-LAEIPEGYVPE---HWEYFKHPISRWIARTFF--DAPEKNYERTMAILQIESEKAELRLKELEVRRLMRAKGDGPWFQY------PTIDKALIDHSPKATPDN--

General information: TITO was launched using: RESULT: Template: 5LNK.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain W - contact count / total energy / energy per contact / energy per residue : 125 -6327 -50.62 -45.52 target 2D structure prediction score : 0.40 Monomeric hydrophicity matching model chain W : 0.58 3D Compatibility (PKB) : -50.62 2D Compatibility (Sec. Struct. Predict.) : 0.40 1D Compatibility (Hydrophobicity) : 0.58 QMean score : -0.072

(partial model without unconserved sides chains): PDB file : Tito_5LNK.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5LNK-query.scw PDB file : Tito_Scwrl_5LNK.pdb: