Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRIIPVYIFQQVNVLLVSLYLLKFLCIGELTILQILYGSSLISFLWMYGQRKQAHKVNMKSRMKWLGVEFVSLLIISLCFSLIHAQGSTNQANLIGLQHQIPWF-SFLLFLINASMVEEFLYREILCNL---VRKLDIR-VALTSVLFALAHHTG-----------TILAWCLYVSLGMFLGMVRYKSDLWGSMGLHLVWNLLVYSLLLF
5K8J Chain:B ((2-128))---------------------------------------------AYVLDTNVAIHLRDGDPEVTTRVTALNGAILLSIISRVELEGGVYREAAQAGLRRSRLDVMLKVLPVLDFDGAAADEYRRIVESAGYSRRKVVDRMIAAQALAHRATFVTFNADDFRDIPGLSLLAW---------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5K8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 411 -54249 -131.99 -488.73
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain B : 0.48

3D Compatibility (PKB) : -131.99
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.48
QMean score : 0.221

(partial model without unconserved sides chains):
PDB file : Tito_5K8J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K8J-query.scw
PDB file : Tito_Scwrl_5K8J.pdb: