Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----MPIDTQLTTLFCLIDDFCTDITQNVEQ------YMLTYGQTKRLRQSKIHASEVITLLLWFHLTGSRNFKAFYLYWAKPFLCSYFTNLPSY----SRFIELKAKYAMYFVALIESLKVHSAGIAFIDSTK--LAVCHN------KRIHQHRVFADSASRGKTSVDWFYGFKIHLICDHIGRLVSYCITTGNVDDRKVLPDLIEHSKLKGKL--FGDRGYVGKNWKSRLAEVGVQLITRVKRNMKPQVLAPFDHAVLKKRGIIEAPFKLMKSQFDLEHSRHRSKMGLL-----------TTIFAALTLYALVLVNGYKSGIQQILKPIDLNSA------------------------
4D08 Chain:A ((4-342))DDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILA-------------TDLAHHLRIFKDLQKMAEVGYDRNN-KQHHRLLLCLLMTSCD-------LSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKVSHKFTIRGLPSNNSLDFLD


General information:
TITO was launched using:
RESULT:

Template: 4D08.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1213 -30195 -24.89 -107.84
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -24.89
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.167

(partial model without unconserved sides chains):
PDB file : Tito_4D08.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4D08-query.scw
PDB file : Tito_Scwrl_4D08.pdb: