Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MMLT------------SKASLRLTLLASAIFLVACQPKSDPKESE-DQQK---PAVVEQKPVELTLKGETVPSKVTLPDCDGKTCPEFTVARLQSNFPFIDKIIDQQVLKALGQILEIAEPDAKAAQADKKTEA-S-TAAATEQ-QD---SFDAQVQRYANSFIDLDNDLKALSSNHQINLLVKPKIIQ-SQGKV-VTVVVNSSSYLGGAHGSAAQQYYNFD---LKKEKQVKLEGLLRPEKKAALEKLAHEAFKAWVTDSKLV-NSVSEYEQAWPFKLTENFLLGDQGLIL--QYGEYEIGPYVVGLPR-LVIPYDQLQDVLKEEYLPQPKAKPASTPAVKSTS
3DSM Chain:A ((1-327))ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS----DEKAYVTQIWDYRIFIIN--------PKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTIT--DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS---EVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRD--TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH


General information:
TITO was launched using:
RESULT:

Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1631 80055 49.08 273.22
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 49.08
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.025

(partial model without unconserved sides chains):
PDB file : Tito_3DSM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DSM-query.scw
PDB file : Tito_Scwrl_3DSM.pdb: