Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMFKPISLYIGLRYTRARRSNHFISFIALVSMVGLTLGVAVLITVLSVMNGFDRELKNRVLGMVPQATVSSTQILTDWPELVKRVENHPHMTGVAPFTQLQGMLTAQGQVAGIMVTGIDPKYEKNVSIIQNHIVAGSLDSLKKGEFGIVLGKDMADSLGLRLNDSVTLVLPEATPSPAGVVPRFKRFKVVGIFSVGAEVDSMVGYIALYDASTLLRLPDGAQGVRLKLDDIFAAPQVADDIVKNLPSNFYATNWTYTHGNLFNAIQMEKTLVGLLLVLIIVVAAFNIVSSLVMVVTDKKSDIAILRTLGASPSMITKIFMVQGTVIGVIGTVAGTVLGVILALTISDIISWFNNVLGLNLFDAYFVHYLPSYLRWKDVTIIVIVSLLLSFLATIYPALRAAKVQPAEALRYE
5ITM Chain:C ((11-37))----------------------------------------------------------------------------------------------------------------------------------------------RNYQVTIPAKVRQKFQIKEGDLVKVTF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5ITM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 18 -6262 -347.86 -231.91
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain C : 0.42

3D Compatibility (PKB) : -347.86
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.42
QMean score : 0.308

(partial model without unconserved sides chains):
PDB file : Tito_5ITM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5ITM-query.scw
PDB file : Tito_Scwrl_5ITM.pdb: