Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPWLYWTLKPKHRIWAEEWQKEYQAYLMDMETVEIGENCFISPLAHIFAEPGRKIKIGDNCFIAADCSLHGPLEIGNEVAINHHCILDGGRAGIKLHDQVRIAAYCHLYAF------DHGMQLDRPLYQQPVRSQGIEIEKDVWLGAHVGIKDGIKIGKHAVVGMNSMVTKDVEPYHIVGGNPAKFIRLRE
3VBJ Chain:A ((24-189))-----------------------QEELKKIGFLSVGKNVLISKKASIY-NPGV-ISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARK


General information:
TITO was launched using:
RESULT:

Template: 3VBJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 871 -126238 -144.93 -788.99
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -144.93
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.489

(partial model without unconserved sides chains):
PDB file : Tito_3VBJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VBJ-query.scw
PDB file : Tito_Scwrl_3VBJ.pdb: