Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNDLLATIFTGIIIDENEKNYFVQKNGQTFGLSKSEGEHKIGEAVEGFGYQNQKHENRITTQIPKSRIGHYAFGIVTATRKDLGAFVDIGLPDKDFVVSLDELPTMTELWPKKGDRLMISLRVDAKDRIWGSLADEKIFKSLSKYGTEEMKNKDVIGTAYRLKLTGTYVLTEDFYLGFIHPSERYNEPRLGEQIKGRVIGVRPDGVLNLSLKPRAYEAISDDAQMILTILERSADQQINFTDKSDPEEIMKAFGISKGAFKRALGNLLKQGLITQENGVTKLVKKSN
5D4S Chain:B ((52-82))-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELMQQFGVSRHTIRKAIGDLVSQGLLYSVQG---------


General information:
TITO was launched using:
RESULT:

Template: 5D4S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 42 -9501 -226.20 -306.47
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.56

3D Compatibility (PKB) : -226.20
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.56
QMean score : 0.676

(partial model without unconserved sides chains):
PDB file : Tito_5D4S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5D4S-query.scw
PDB file : Tito_Scwrl_5D4S.pdb: