Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEKCYTDVTEFAIPASTQKLYLSPVLDGFNSEIIAYNL---STSPNLEQVKSMLEQAFTEKYYENTILHSDQGWQYQHDSYHRFLESKGIQASMSRKGNSQDNGMMESFFGILKFMAMRKHLNHLINWNKLL
3OYD Chain:A ((136-249))------------LPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSIAIPK------VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLL


General information:
TITO was launched using:
RESULT:

Template: 3OYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 375 -3991 -10.64 -35.95
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : -10.64
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.296

(partial model without unconserved sides chains):
PDB file : Tito_3OYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3OYD-query.scw
PDB file : Tito_Scwrl_3OYD.pdb: