Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIAVDAMGGDYAPQAIVEGVNQALSDFSDIEVQLYGDEAKIKQYLT----ATERVSIIHTDEKIDSDD-------------EPTRAIRNKKNASMVLAAKAVKDGEADAVLSA--GNTGALLAAGFFIVGRIKNIDRPGLMSTLPTVDGKGFDMLDLGANAENTAQHLHQYAVLGSFYAKNVRGIAQPRVGLLNNGTESSKGD---PLRKETYELLAADE----SL-NFIGNVEAR--------------DLMNGVADVVVADGF-TGNAVLKSIEGTAMGIMGLLKTAITGGGLRAKLGALLLKDSLRGLKKQLNYSDVGGAVLFGVKAPVVKTHGSSDAKAVYSTIRQIRTMLETDVVAQTAREFSGE
4E4R Chain:A ((29-330))-------------DE-RVLTAATQLQATD-YVTPIVLGDETKVQSLAQKLNLDISNIELINPATSELKAELVQSFVERRKGKTTEEQAQELL-NNVNYFGTMLVYAGKADGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKG-DEQYIFGDCAINPELDSQGLAEIAVESAKSALS-FGM-DPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAEKKAPGAKLQGDANVFVFPSLEAGNIGYKIAQ------------RLG-------------------------GYDAVGPVLQGLNSPVNDLSRGCSIEDVYNLSFITAAQAL--------------


General information:
TITO was launched using:
RESULT:

Template: 4E4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1218 35871 29.45 137.97
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 29.45
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.525

(partial model without unconserved sides chains):
PDB file : Tito_4E4R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4E4R-query.scw
PDB file : Tito_Scwrl_4E4R.pdb: