Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------MKRIIPVYIFQQVNVLLVS--------LYLLKFLCI-------------GELTILQILYGSSLISFLWMYGQRKQAHKV-NMKSRMKWLGVEFVSLLIISLCFSLI-HA-QGSTNQANLIGLQHQIPWFSFLLFLI-NAS---MVEEFLYR--------EILCNLVRKLDIRVALTSVLFALAHHTGTILAWCLYVSLGMFLGMVRYKSDLWGSMGLHLVWNLLVYSLLLF-------------------
4RGP Chain:A ((2-256))NATEQETLTILLDVYAYYQAYQIVKASQFFSDDIIFLLELLKERRELNVDFLFQNQVHLQELELTYHISLLDN--AYEEELLANYIMDLEAKLRNDHIIDFVRSVSPILYRLLMRLMQSQVADINDYIYDAKNDQYDTWKFDKMHDSANPFVQNFVAKGRDSKITSRSLADFIQLTDLPQAIKDNILLLRDFEKSVRNPLAHLIKPFDEEELHRTTGFSSQTFLEKIIQLAVFSGIHYDNDKFYFDKVNELIKRIYQ


General information:
TITO was launched using:
RESULT:

Template: 4RGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 622 -49361 -79.36 -255.75
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -79.36
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.233

(partial model without unconserved sides chains):
PDB file : Tito_4RGP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RGP-query.scw
PDB file : Tito_Scwrl_4RGP.pdb: