Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLQFIASCPQHGVLDHPPNECHITQEYVAALLFKQLGNYGFDA--QHIVHEHE----KVEVSIDNHLL-PLSITCQQTDHDGHLMCEISANPDEEQDWFEKIETQSIIRQLAQAVENSLKADHSFSAFEWKS
5JJD Chain:B ((19-108))-------------------------VEEMVQNHMTYSLQDVG-DANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLA--------------------


General information:
TITO was launched using:
RESULT:

Template: 5JJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 131 4728 36.09 58.37
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain B : 0.64

3D Compatibility (PKB) : 36.09
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.160

(partial model without unconserved sides chains):
PDB file : Tito_5JJD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JJD-query.scw
PDB file : Tito_Scwrl_5JJD.pdb: