Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKTKTVVTTFDNVSIKRIAFNFKNAGNAIATNCNGQLDGETEMQTVVKKCGATEVKSKSKPINMTVTI---TAHVPMEVYRRFNGLKQDGRIKPGIYSYGPDSVGEDFSLAAEIVD-------DFEENRKLVGMLACTSNTGLTFSIENGADEVAALELETKVMQDEFGKFYHEAIVAELEEDLTDQWMTNLSADVIKKTSVVTTTATQSQ
1TYF Chain:A ((11-193))-SRGERSFDIYSRLLKERVIFLT------------GQVE-DHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQF------IKPDVSTICMGQAA---SMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERD------RFLSAPEAVEYGLVDSILTHRN


General information:
TITO was launched using:
RESULT:

Template: 1TYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 731 -26349 -36.04 -152.30
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -36.04
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.314

(partial model without unconserved sides chains):
PDB file : Tito_1TYF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1TYF-query.scw
PDB file : Tito_Scwrl_1TYF.pdb: